Bring your data
Upload FASTQ files or enter a GEO accession. Xplore organizes samples inside a persistent project workspace.
2
production workflows
5
visible analysis stages
2
notification channels
1
reproducible workspace
How Xplore works
A complete analysis path, without the black box.
Automate the repetitive work while keeping every stage, decision, and output within reach.
Configure once
Choose the organism, workflow, and analysis intent. Smart defaults remain visible and editable.
Run the pipeline
Quality control, read preparation, alignment, quantification, and differential analysis run in sequence.
Explore and share
Review plots and diagnostics, download a PDF summary, and receive email or Telegram updates.
Workflow library
Purpose-built for sequencing data.
Clear availability labels tell you what can run today and what is still being developed.
RNAAvailable
Bulk RNA-seq
From read quality and STAR alignment to count matrices, DESeq2 contrasts, and publication-ready plots.
RPFAvailable
Ribo-seq
Ribosome-footprint analysis with adapter and UMI handling, RPF diagnostics, alignment, and differential analysis.
SCPreview
Single-cell
A focused workspace for cell-level exploration and future end-to-end single-cell processing.
+Planned
More workflows
ChIP-seq and variant-analysis workspaces are part of the roadmap—not presented as finished features.
Autonomous, not opaque
Let the pipeline run. Keep the evidence.
Xplore removes pipeline babysitting without hiding what happened along the way.
Quality controlStage 1
Read preparationStage 2
AlignmentStage 3
QuantificationStage 4
DE + plotsStage 5
Autonomous execution
Close the tab. The analysis keeps moving.
Long-running workflows continue on the server, with recorded stage progress and clear failure diagnostics when intervention is needed.
Transparent results
Every stage remains inspectable.
Move from QC through differential analysis with the inputs, outputs, summaries, and reused results visible inside one project.
Reporting
Know when results are ready.
Receive detailed email or Telegram notifications, then open the workspace or skim a generated PDF summary.
FAQ
Questions before your first run.
Xplore currently provides end-to-end Bulk RNA-seq and Ribo-seq workflows. Single-cell is available as an evolving workspace, while additional sequencing workflows remain on the roadmap.
You can upload FASTQ files or start from a public GEO accession. Xplore keeps the inputs and generated outputs organized inside a persistent project workspace.
Yes. Fully autonomous runs execute on the server and continue after the tab is closed. You can return later to review the current stage, completed outputs, and any failure diagnostics.
The workflow covers quality control, adapter and read preparation, alignment, quantification, and differential analysis with plots. Existing valid outputs may be reused and are labeled as such.
You can enable email and Telegram alerts. Notifications include the project, workflow, stage-by-stage status, completion time, dashboard link, and the exact failure reason when a run stops.
Yes. Automation handles orchestration, not visibility. QC, alignment, quantification, differential results, logs, and summaries remain available in the dashboard for review.
Contact
Let's talk.
Have a question or want to learn more? Drop us a message and we'll get back to you shortly.
Get started
Start with reads. Finish with evidence.
Create a workspace, bring FASTQ files or a GEO accession, and follow every stage from quality control to interpretable results.
No credit card · FASTQ or GEO input · Transparent stages